PhD
Beside working at The University of Manchester I am a PhD Candidate in the INDElab at the Informatics Institute of the University of Amsterdam.
My supervisor is Paul Groth and my topic is Using Research Objects to improve reproducibility. I started in July 2019.
As I am doing a thesis by publication, these pages gather the articles submitted/accepted/published so far that will become part of my PhD thesis. Note that some of these articles have been slightly reformatted to fit publication on the Web.
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Chapter 1: Introduction TODO: Introduction to PhD
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Chapter 2: Updating Linked Data practices for FAIR Digital Object principles Talk abstract presented at FAIR Digital Objects conference (FDO2022)
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Chapter 4: Creating lightweight FAIR Digital Objects with RO-Crate Poster abstract presented at FAIR Digital Objects conference (FDO2022)
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Chapter 5: Packaging research artefacts with RO-Crate Journal article published in Data Science
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Chapter 6: Making Canonical Workflow Building Blocks interoperable across workflow languages Journal article published in Data Intelligence
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Chapter 7: Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows Poster abstract presented at FAIR Digital Objects conference (FDO2022)
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Chapter 8: The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural history collections Journal article published in Data Intelligence
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Chapter 9: Summary TODO: Discussions and conclusions of PhD
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Chapter 10: Contributions TODO: Contributions of PhD
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Chapter 11: Acknowledgements TODO: Acknowledgements of PhD
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Supplement 1: Ten Simple Rules for making a software tool workflow-ready Journal article published in PLOS Computational Biology
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Supplement 2: Enhancing RDM in Galaxy by integrating RO-Crate Poster abstract presented at FAIR Digital Objects conference (FDO2022)
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Supplement 4: Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language Journal article published in Communications of the ACM
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Supplement 5: Semantic micro-contributions with decentralized nanopublication services Journal article published in PeerJ Computer Science