Chapter 1: Introduction
TODO: Introduction to PhD
Chapter 2: Updating Linked Data practices for FAIR Digital Object principles
Talk abstract submitted to FAIR Digital Objects conference (FDO2022)
Chapter 3: Evaluating FAIR Digital Object as a distributed object system
Work in progress
Chapter 4: Creating lightweight FAIR Digital Objects with RO-Crate
Poster abstract submitted to FAIR Digital Objects conference (FDO2022)
Chapter 5: Packaging research artefacts with RO-Crate
Journal article published in Data Science
Chapter 6: Making Canonical Workflow Building Blocks interoperable across workflow languages
Journal article published in Data Intelligence
Chapter 7: Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows
Poster abstract accapted for FAIR Digital Objects conference (FDO2022)
Chapter 8: The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural history collections
Journal article published in Data Intelligence
Chapter 9: Summary
TODO: Discussions and conclusions of PhD
Chapter 10: Contributions
TODO: Contributions of PhD
Chapter 11: Acknowledgements
TODO: Acknowledgements of PhD
Supplement 1: Ten Simple Rules for making a software tool workflow-ready
Journal article published in PLOS Computational Biology
Supplement 2: Enhancing RDM in Galaxy by integrating RO-Crate
Talk abstract submitted to FAIR Digital Objects conference (FDO2022)
Supplement 4: Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language
Journal article published in Communications of the ACM
About Stian Soiland-Reyes
Overview tl;dr: Open Source research software engineer with interests in Linked Data, RESTful web services, provenance, annotations, open science, reproducible research results. twitter.com/soilandreyes orcid.org/0000-0001-9842-9718 slides.com/soilandreyes slideshare.net/soilandreyes github.com/stain linkedin.com/in/stain/ Biography Stian Soiland-Reyes is a Technical Architect and Research Associate at the eScience Lab in the Department of Computer Science. As a joint researcher and software developer he is working on reproducibility, provenance and metadata to improve FAIR sharing of open research data and computational workflows, within ELIXIR Europe, European Open Science Cloud (EOSC) projects including EOSC-Life and the workflow repository WorkflowHub.
Publications by Stian Soiland-Reyes
Academic publications by Stian Soiland-Reyes, including journal articles, conference papers/abstracts and theses.
Stian's web sites in ye olden days
Archived personal websites These are slightly embarrassing archives from more innocent times, preserved so you can see why I didn’t become a Web designer. s11.no ≔ з11.ею (2020–) – The current Hugo-based static website, launched primarily as home for archived HTML pages. Based on ronu-hugo-theme by Deepak Karanth, see stain/s11.no. The alternative domain https://з11.ею/ is available to test UTF-8 support. s11.no (2015–2019) – Bootstrap-based landing page for Søiland Software, linking to whatever development Web services was running at the time.