Publication

• Evaluating FAIR Digital Object and Linked Data as distributed object systems Journal article published in PeerJ Computer Science
• Packaging research artefacts with RO-Crate Journal article published in Data Science
• Making Canonical Workflow Building Blocks interoperable across workflow languages Journal article published in Data Intelligence
• The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural history collections Journal article published in Data Intelligence
• Recording provenance of workflow runs with RO-Crate Journal article published in PLOS One
• Tracking workflow execution with TavernaProv

  Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison.

  Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), attributions and annotations; for brevity we here focus on how Taverna’s workflow run provenance extends PROV and is embedded with Research Objects.

• BioHackEU23 report: Enabling FAIR Digital Objects with RO-Crate, Signposting and Bioschemas BioHackrXiv preprint from ELIXIR BioHackathon 2023
• Datasets A brief list of datasets and research objects (co)-created by Stian Soiland-Reyes (work in progress)
• FAIR Computational workflows Journal article published in Data Intelligence
• Federated causal inference based on real-world observational data sources: application to a SARS-CoV-2 vaccine effectiveness assessment Journal article in BMC Medical Research Methodology
• Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language Journal article published in Communications of the ACM
• Other documents Reports, specifications and deliverables (co)authored by Stian Soiland-Reyes (work in progress)
• Posters Posters presented by Stian Soiland-Reyes at conferences (work in progress)
• Presentations Presentations and talks presented by Stian Soiland-Reyes at conferences and meetings (work in progress)
• Publications by Stian Soiland-Reyes Academic publications by Stian Soiland-Reyes, including journal articles, conference papers/abstracts and theses.
• Scientific workflows, community roadmap, data management, AI workflows, exascale computing, interoperability Preprint for proceedings article for 2021 IEEE Workshop on Workflows in Support of Large-Scale Science
• Semantic micro-contributions with decentralized nanopublication services Journal article published in PeerJ Computer Science
• Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv Journal article published in GigaScience
• Software Software (co)developed or maintained by Stian Soiland-Reyes (work in progress)
• Ten Simple Rules for making a software tool workflow-ready Journal article published in PLOS Computational Biology