Other documents

Note: This list is Work in progress and incomplete, showing documents (reports, specifications and deliverables) (co)authored by Stian Soiland-Reyes. See also Zenodo.

Eli Chadwick, Oliver Woolland, Volodymyr Savchenko, Finn Bacall, Alexander Hambley, José María Fernández, Armin Dadras, Stian Soiland-Reyes (2025):
EuroScienceGateway MS6: Integrated EuroScienceGateway knowledge graph.
Zenodo (project milestone)
https://doi.org/10.5281/zenodo.16992674

Peter Sefton, Eoghan Ó Carragáin, Stian Soiland-Reyes (eds.), Oscar Corcho, Daniel Garijo, Raul Palma, Frederik Coppens, Carole Goble, José María Fernández, Kyle Chard, Jose Manuel Gomez-Perez, Michael R Crusoe, Ignacio Eguinoa, Nick Juty, Kristi Holmes, Jason A. Clark, Salvador Capella-Gutierrez, Alasdair J. G. Gray, Stuart Owen, Alan R Williams, Giacomo Tartari, Finn Bacall, Thomas Thelen, Hervé Ménager, Laura Rodríguez Navas, Paul Walk, brandon whitehead, Mark Wilkinson, Paul Groth, Erich Bremer, LJ Garcia Castro, Karl Sebby, Alexander Kanitz, Ana Trisovic, Gavin Kennedy, Mark Graves, Jasper Koehorst, Simone Leo, Marc Portier, Paul Brack, Milan Ojsteršek, Bert Droesbeke, Chenxu Niu, Kosuke Tanabe, Tomasz Miksa, Marco La Rosa, Cedric Decruw, Andreas Czerniak, Jeremy Jay, Sergio Serra, Ronald Siebes, Shaun de Witt, Shady El Damaty, Douglas Lowe, Xuanqi Li, Sveinung Gundersen, Muhammad Radifar, Rudolf Wittner, Oliver Woolland, Paul De Geest, Douglas Fils, Florian Wetzels, Raül Sirvent, Abigail Miller, Jake Emerson, Davide Fucci, Bruno P. Kinoshita, Maciek Bąk, Jens Hollunder, Martin Weise, Vartika Bisht, Toshiyuki Nishiyama Hiraki, Bram Ulrichts, Michael Falk, Eli Chadwick, Daniel Bauer, James Love, Eleni Adamidi, Josh Moore, Lars Schöbitz, Andreas Meier, Juan Fuentes, Edan Bainglass, Balazs E. Pataki (2025):
RO-Crate Metadata Specification 1.2.
researchobject.org community
https://doi.org/10.5281/zenodo.13751027

Stian Soiland-Reyes, Björn Grüning, Paul De Geest (2025):
EuroScienceGateway MS3: Initial EuroScienceGateway workflows registered.
Zenodo (project milestone)
https://doi.org/10.5281/zenodo.10728922

Stian Soiland-Reyes, Eli Chadwick, Armin Dadras, Björn Grüning, Catalin Condurache, Sebastian Luna-Valero, Volodymy Savchenko (2025):
EuroScienceGateway D2.2: Publishing workflow enriched FDOs to EOSC.
Zenodo (project deliverable)
https://doi.org/10.5281/zenodo.15094824

Christian Cole, Philip Quinlan, Jim Smith, Stian Soiland-Reyes, Simon Li, Alexander Hambley, Tim Machin, Simon Thompson, Gordon Milligan, Antony Chuter, Rob Baster (2025):
The TREvolution Profile.
DARE UK / Zenodo (project deliverable) https://doi.org/10.5281/zenodo.15479820

Stian Soiland-Reyes, Eli Chadwick, Finn Bacall, José M Fernández, Björn Grüning, Hakan Bayındır (2024):
EuroScienceGateway D2.1: Reproducible FAIR Digital Objects for Workflows Creators.
Zenodo (project deliverable)
https://doi.org/10.5281/zenodo.13225792

Philip Quinlan, Laia Codó, Jonathan Couldridge, Eugenio Gonzalo Jimenez, Stian Soiland-Reyes, José María Fernández González, Tim Beck (2024):
EOSC-ENTRUST D19.1 Deployable Demonstrator of Digital Objects & Workflows Developments.
Zenodo (project deliverable)
https://doi.org/10.5281/zenodo.14412863

Tom Giles, Phil Quinlan, Jeroen Belien, Julia Lischke, Laura Portell-Silva, Salvador Capella-Guiterrez, Reagon Karki, Vasso Kalaitzi, Enrique Bernal-Delgado Alfonso Valencia, Antje Keppler (2022):
BY-COVID D2.1 - Initial data and metadata harmonisation at domain level to enable fast responses to COVID-19.
Zenodo (project deliverable)
https://doi.org/10.5281/zenodo.7017728

Henning Hermjakob, Mari Kleemola, Katja Moilanen, Susanna-Assunta Sansone, Allyson Lister, Romain David, Maria Panagiotopoulou, Christian Ohmann, Jeroen Belien, Julia Liscke, Nick Juty, Stian Soiland-Reyes (2022):
BY-COVID D3.1 - Metadata standards. Documentation on metadata standards for inclusion of resources in data portal.
Zenodo (project deliverable)
https://doi.org/10.5281/zenodo.6885016

Neil P. Chue Hong, Daniel S. Katz, Michelle Barker; Anna-Lena Lamprecht, Carlos Martinez, Fotis E. Psomopoulos, Jen Harrow, Leyla Jael Castro, Morane Gruenpeter, Paula Andrea Martinez, Tom Honeyman; Alexander Struck, Allen Lee, Axel Loewe, Ben van Werkhoven, Catherine Jones, Daniel Garijo, Esther Plomp, Francoise Genova, Hugh Shanahan, Joanna Leng, Maggie Hellström, Malin Sandström, Manodeep Sinha, Mateusz Kuzak, Patricia Herterich, Qian Zhang, Sharif Islam, Susanna-Assunta Sansone, Tom Pollard, Udayanto Dwi Atmojo; Alan Williams, Andreas Czerniak, Anna Niehues, Anne Claire Fouilloux, Bala Desinghu, Carole Goble, Céline Richard, Charles Gray, Chris Erdmann, Daniel Nüst, Daniele Tartarini, Elena Ranguelova, Hartwig Anzt, Ilian Todorov, James McNally, Javier Moldon, Jessica Burnett, Julián Garrido-Sánchez, Khalid Belhajjame, Laurents Sesink, Lorraine Hwang, Marcos Roberto Tovani-Palone, Mark D. Wilkinson, Mathieu Servillat, Matthias Liffers, Merc Fox, Nadica Miljković, Nick Lynch, Paula Martinez Lavanchy, Sandra Gesing, Sarah Stevens, Sergio Martinez Cuesta, Silvio Peroni, Stian Soiland-Reyes, Tom Bakker, Tovo Rabemanantsoa, Vanessa Sochat, Yo Yehudi, FAIR4RS WG (2022):
FAIR Principles for Research Software version 1.0 (FAIR4RS Principles v1.0).
Research Data Alliance
https://doi.org/10.15497/RDA00068

Peter Wittenburg, Ivonne Anders, Christophe Blanchi, Merret Buurman, Carole Goble, Jonas Grieb, Alex Hardisty, Sharif Islam, Thomas Jejkal, Tibor Kálmán, Christine Kirkpatrick, Laurence Lannom, Thomas Lauer, Giridhar Manepalli, Karsten Peters-von Gehlen, Andreas Pfeil, Robert Quick, Mark van de Sanden, Ulrich Schwardmann, Stian Soiland-Reyes, Rainer Stotzka, Zachary Trautt, Dieter Van Uytvanck, Claus Weiland, Philipp Wieder (2022):
FAIR Digital Object Demonstrators 2021.
Report, FAIR Digital Objects Forum. Zenodo
https://doi.org/10.5281/zenodo.5872645

Bert Droesbeke; floradanna; Pinar Alper; Daniel Faria; Martin Cook; Munazah; Korbinian Bösl; Niclas Jareborg; wittigue; Markus Englund; elinkronander; Frederik Coppens; YvonneKallberg; Pete; Laura Portell Silva; Siiri Fuchs; Chris Child; MijkeJetten; minnami; Carole Goble; Olivier Collin; Ivan Mičetić; Karel Berka; Federico Bianchini; Rob Hooft; afablondon; Stian Soiland-Reyes; Michael R. Crusoe; Sirarat Sarntivijai (2021):
elixir-europe/rdmkit: v1.0.0 - Public release.
Zenodo https://doi.org/10.5281/zenodo.5110060

Stian Soiland-Reyes, Mercos Cáceres (2018):
The Archive and Package (arcp) URI scheme.
Internet Engineering Task Force, Internet-Draft draft-soilandreyes-arcp-03, 2018-01-17. https://datatracker.ietf.org/doc/draft-soilandreyes-arcp/

Peter Amstutz, Michael R. Crusoe, Nebojša Tijanić (editors), Brad Chapman, John Chilton, Michael Heuer, Andrey Kartashov, Dan Leehr, Hervé Ménager, Maya Nedeljkovich, Matt Scales, Stian Soiland-Reyes, Luka Stojanovic (2016):
Common Workflow Language, v1.0
Specification, Common Workflow Language working group. https://w3id.org/cwl/v1.0/ https://doi.org/10.6084/m9.figshare.3115156.v2

Gil Y, Miles S, Belhajjame K, Deus H, Garijo D, Klyne G et al. PROV Model Primer: W3C Working Group Note. Provenance Working Group. 2013 Apr 30. (W3C Working Group Note).

Klyne G, Groth P, Moreau L, Hartig O, Simmhan Y, Myers J et al. PROV-AQ: Provenance Access and Query. http://www.w3.org/TR/prov-aq/: World Wide Web Consortium, 2013. (W3C Working Group Note).

Moreau L, Missier P, Cheney J, Soiland-Reyes S. PROV-N: The Provenance Notation. http://www.w3.org/TR/prov-n/: World Wide Web Consortium, 2013. (W3C Recommendation).

Lebo T, Sahoo S, McGuinness D, Belhajjame K, Cheney J, Corsar D et al. PROV-O: The PROV Ontology. http://www.w3.org/TR/prov-o/: World Wide Web Consortium, 2013. (W3C Recommendation).

Nies TD, Coppens S, Missier P, Moreau L, Cheney J, Lebo T et al. PROV-Dictionary: Modeling Provenance for Dictionary Data Structures. http://www.w3.org/TR/prov-dictionary/: World Wide Web Consortium, 2014.

Wolstencroft K, Pawlik A, Williams AR, Li P, Morrison N, Soiland-Reyes S et al. Taverna Tutorials 2014-09-01 (Bonn): Training material. 2014. https://doi.org/10.5281/ZENODO.11590

Soiland-Reyes S, Gamble M, Haines R. Research Object Bundle 1.0: researchobject.org Specification 05 November 2014. researchobject.org, 2014. 9 p. https://doi.org/10.5281/zenodo.12586

Soiland-Reyes S, Gamble M, Corcho O, Warner S. ORE User Guide - Resource Map Implementation in JSON-LD 0.9. Open Archives Initiative, 2014. (Open Archives Initiative Object Reuse and Exchange). https://doi.org/10.5281/zenodo.11293